63 citations · 73 across the 4 of their papers we have counts for
4 papers
Struc2mapGAN: improving synthetic cryo-EM density maps with generative adversarial networks
Chenwei Zhang, Anne Condon, Khanh Dao Duc
Generating synthetic cryogenic electron microscopy 3D density maps from molecular structures has potential important applications in structural biology. Yet existing simulation-bas…
Optimal control of ribosome population for gene expression under periodic nutrient intake
Clément Soubrier, Eric Foxall, Luca Ciandrini +1
Translation of proteins is a fundamental part of gene expression that is mediated by ribosomes. As ribosomes significantly contribute to both cellular mass and energy consumption,…
EGGTART: A computational tool to visualize the dynamics of biophysical transport processes under the inhomogeneous -TASEP
Dan D. Erdmann-Pham, Wonjun Son, Khanh Dao Duc +1
The totally asymmetric simple exclusion process (TASEP), which describes the stochastic dynamics of interacting particles on a lattice, has been actively studied over the past seve…
The key parameters that govern translation efficiency
Dan D. Erdmann-Pham, Khanh Dao Duc, Yun S. Song
Translation of mRNA into protein is a fundamental yet complex biological process with multiple factors that can potentially affect its efficiency. Here, we study a stochastic model…