67 citations · 130 across the 3 of their papers we have counts for
3 papers
OpenFPM: A scalable open framework for particle and particle-mesh codes on parallel computers
Pietro Incardona, Antonio Leo, Yaroslav Zaluzhnyi +2
Scalable and efficient numerical simulations continue to gain importance, as computation is firmly established as the third pillar of discovery, alongside theory and experiment. Me…
Global parameter identification of stochastic reaction networks from single trajectories
Christian L. Muller, Rajesh Ramaswamy, Ivo F. Sbalzarini
We consider the problem of inferring the unknown parameters of a stochastic biochemical network model from a single measured time-course of the concentration of some of the involve…
A new class of highly efficient exact stochastic simulation algorithms for chemical reaction networks
Rajesh Ramaswamy, Nélido González-Segredo, Ivo F. Sbalzarini
We introduce an alternative formulation of the exact stochastic simulation algorithm (SSA) for sampling trajectories of the chemical master equation for a well-stirred system of co…