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Jakub R. Kaczmarzyk

Stony Brook University, Cold Spring Harbor Laboratory

6 papers hereh-index 13794 citations29 works total

Matching runs newest-first, so older work may not be attached to this profile yet.

author position
  • first author1
  • middle author4

Across the 5 of 6 papers where every author was matched, so the position is known.

fields
  • q-bio.QM2
  • cs.AI1
  • cs.CV1
  • cs.LG1
  • q-bio.TO1
affiliations
  • Stony Brook University, Cold Spring Harbor Laboratory
Homepage
same name
  • Jakub R. Kaczmarzyk — 3 papers, h 2

Either other researchers who publish under this name, or the same person where the external sources have not merged their records.

identity via Semantic Scholar / OpenAlex

activity
20182023
most citedOpen and reusable deep learning for pathology with WSInfer and QuPath

25 citations · 48 across the 6 of their papers we have counts for

collaborators
Showing 2022Show all

3 papers · 1 filter

cs.AI2022

AI and Pathology: Steering Treatment and Predicting Outcomes

Rajarsi Gupta, Jakub Kaczmarzyk, Soma Kobayashi +2

The combination of data analysis methods, increasing computing capacity, and improved sensors enable quantitative granular, multi-scale, cell-based analyses. We describe the rich s…

q-bio.QM2022★ 16 cited

Evaluating histopathology transfer learning with ChampKit

Jakub R. Kaczmarzyk, Tahsin M. Kurc, Shahira Abousamra +3

Histopathology remains the gold standard for diagnosis of various cancers. Recent advances in computer vision, specifically deep learning, have facilitated the analysis of histopat…

q-bio.QM2022

A Novel Framework for Characterization of Tumor-Immune Spatial Relationships in Tumor Microenvironment

Mahmudul Hasan, Jakub R. Kaczmarzyk, David Paredes +9

Understanding the impact of tumor biology on the composition of nearby cells often requires characterizing the impact of biologically distinct tumor regions. Biomarkers have been d…

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Not affiliated with arXiv. Researcher data from Semantic Scholar (ODC-BY) and OpenAlex.