activity
20182025
most citedA Simple Standard for Sharing Ontological Mappings (SSSOM)

94 citations · 186 across the 7 of their papers we have counts for

collaborators

7 papers

q-bio.OT2025

Bridge2AI Recommendations for AI-Ready Genomic Data

Matthew Cannon, Wesley Goar, In-Hee Lee +7

Rapid advancements in technology have led to an increased use of artificial intelligence (AI) technologies in medicine and bioinformatics research. In anticipation of this, the Nat…

q-bio.OT2025

Toward AI-Ready Medical Imaging Data

Milen Nikolov, Edilberto Amorim, J Harry Caufield +9

Medical imaging data plays a vital role in disease diagnosis, monitoring, and clinical research discovery. Biomedical data managers and clinical researchers must navigate a complex…

q-bio.OT2025

Standards in the Preparation of Biomedical Research Metadata: A Bridge2AI Perspective

Harry Caufield, Satrajit Ghosh, Sek Wong Kong +6

AI-readiness describes the degree to which data may be optimally and ethically used for subsequent AI and Machine Learning (AI/ML) methods, where those methods may involve some com…

cs.AI2023★ 53 cited

Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI)

Sabrina Toro, Anna V Anagnostopoulos, Sue Bello +27

Background: Ontologies are fundamental components of informatics infrastructure in domains such as biomedical, environmental, and food sciences, representing consensus knowledge in…

q-bio.QM2023

KG-Hub -- Building and Exchanging Biological Knowledge Graphs

J Harry Caufield, Tim Putman, Kevin Schaper +23

Knowledge graphs (KGs) are a powerful approach for integrating heterogeneous data and making inferences in biology and many other domains, but a coherent solution for constructing,…

cs.DB2021★ 94 cited

A Simple Standard for Sharing Ontological Mappings (SSSOM)

Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello +41

Despite progress in the development of standards for describing and exchanging scientific information, the lack of easy-to-use standards for mapping between different representatio…

q-bio.GN2018★ 39 cited

A quick guide for student-driven community genome annotation

Prashant S. Hosmani, Teresa Shippy, Sherry Miller +8

High quality gene models are necessary to expand the molecular and genetic tools available for a target organism, but these are available for only a handful of model organisms that…