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cs.FL2018★ 13 cited
Estimating probabilistic context-free grammars for proteins using contact map constraints
Witold Dyrka, François Coste, Juliette Talibart
Learning language of protein sequences, which captures non-local interactions between amino acids close in the spatial structure, is a long-standing bioinformatics challenge, which…
cs.FL2016
How to measure the topological quality of protein grammars?
Witold Dyrka, François Coste, Olgierd Unold +2
Context-free and context-sensitive formal grammars are often regarded as more appropriate to model proteins than regular level models such as finite state automata and Hidden Marko…