activity
20152026
most citedEstimating probabilistic context-free grammars for proteins using contact map constraints

13 citations · 20 across the 5 of their papers we have counts for

collaborators

5 papers

cs.CV2026

Distribution-based deep multiple instance learning for tumor proportion scoring in NSCLC

Krzysztof Pysz, Artur Bartczak, Jarosław Kwiecień +2

Accurate assessment of tumor proportion score (TPS) in non-small cell lung cancer (NSCLC) is critical for treatment planning and prognosis. Key challenges include the tedious manua…

cs.FL2018★ 13 cited

Estimating probabilistic context-free grammars for proteins using contact map constraints

Witold Dyrka, François Coste, Juliette Talibart

Learning language of protein sequences, which captures non-local interactions between amino acids close in the spatial structure, is a long-standing bioinformatics challenge, which…

cs.FL2016

How to measure the topological quality of protein grammars?

Witold Dyrka, François Coste, Olgierd Unold +2

Context-free and context-sensitive formal grammars are often regarded as more appropriate to model proteins than regular level models such as finite state automata and Hidden Marko…

cs.CV2016★ 4 cited

Machine learning methods for accurate delineation of tumors in PET images

Jakub Czakon, Filip Drapejkowski, Grzegorz Zurek +3

In oncology, Positron Emission Tomography imaging is widely used in diagnostics of cancer metastases, in monitoring of progress in course of the cancer treatment, and in planning r…

q-bio.BM2015★ 3 cited

Fast assessment of structural models of ion channels based on their predicted current-voltage characteristics

Witold Dyrka, Monika Kurczyńska, Bogumił M. Konopka +1

Computational prediction of protein structures is a difficult task, which involves fast and accurate evaluation of candidate model structures. We propose to enhance single model qu…