34 citations · 38 across the 4 of their papers we have counts for
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q-bio.BM2025★ 1 cited
A standard transformer and attention with linear biases for molecular conformer generation
Viatcheslav Gurev, Timothy Rumbell
Sampling low-energy molecular conformations, spatial arrangements of atoms in a molecule, is a critical task for many different calculations performed in the drug discovery and opt…
q-bio.GN2025★ 2 cited
BMFM-RNA: whole-cell expression decoding improves transcriptomic foundation models
Michael M. Danziger, Bharath Dandala, Viatcheslav Gurev +12
Transcriptomic foundation models pretrained with masked language modeling can achieve low pretraining loss yet produce poor cell representations for downstream tasks. We introduce…