469 citations · 1k across the 24 of their papers we have counts for
8 papers · 1 filter
Automatic Registration of SHG and H&E Images with Feature-based Initial Alignment and Intensity-based Instance Optimization: Contribution to the COMULIS Challenge
Marek Wodzinski, Henning Müller
The automatic registration of noninvasive second-harmonic generation microscopy to hematoxylin and eosin slides is a highly desired, yet still unsolved problem. The task is challen…
Lymphoid Infiltration Assessment of the Tumor Margins in H&E Slides
Zhuxian Guo, Amine Marzouki, Jean-François Emile +3
Lymphoid infiltration at tumor margins is a key prognostic marker in solid tumors, playing a crucial role in guiding immunotherapy decisions. Current assessment methods, heavily re…
Automatic Labels are as Effective as Manual Labels in Biomedical Images Classification with Deep Learning
Niccolò Marini, Stefano Marchesin, Lluis Borras Ferris +12
The increasing availability of biomedical data is helping to design more robust deep learning (DL) algorithms to analyze biomedical samples. Currently, one of the main limitations…
ROCOv2: Radiology Objects in COntext Version 2, an Updated Multimodal Image Dataset
Johannes Rückert, Louise Bloch, Raphael Brüngel +11
Automated medical image analysis systems often require large amounts of training data with high quality labels, which are difficult and time consuming to generate. This paper intro…
Improving Quality Control of Whole Slide Images by Explicit Artifact Augmentation
Artur Jurgas, Marek Wodzinski, Marina D'Amato +3
The problem of artifacts in whole slide image acquisition, prevalent in both clinical workflows and research-oriented settings, necessitates human intervention and re-scanning. Ove…
Patch-Based Encoder-Decoder Architecture for Automatic Transmitted Light to Fluorescence Imaging Transition: Contribution to the LightMyCells Challenge
Marek Wodzinski, Henning Müller
Automatic prediction of fluorescently labeled organelles from label-free transmitted light input images is an important, yet difficult task. The traditional way to obtain fluoresce…
RegWSI: Whole Slide Image Registration using Combined Deep Feature- and Intensity-Based Methods: Winner of the ACROBAT 2023 Challenge
Marek Wodzinski, Niccolò Marini, Manfredo Atzori +1
The automatic registration of differently stained whole slide images (WSIs) is crucial for improving diagnosis and prognosis by fusing complementary information emerging from diffe…
DeeperHistReg: Robust Whole Slide Images Registration Framework
Marek Wodzinski, Niccolò Marini, Manfredo Atzori +1
DeeperHistReg is a software framework dedicated to registering whole slide images (WSIs) acquired using multiple stains. It allows one to perform the preprocessing, initial alignme…