38 citations · 44 across the 2 of their papers we have counts for
3 papers
cs.DS2018
Haplotype-aware graph indexes
Jouni Sirén, Erik Garrison, Adam M. Novak +2
The variation graph toolkit (VG) represents genetic variation as a graph. Each path in the graph is a potential haplotype, though most paths are unlikely recombinations of true hap…
q-bio.GN2015★ 6 cited
Canonical, Stable, General Mapping using Context Schemes
Adam Novak, Yohei Rosen, David Haussler +1
Motivation: Sequence mapping is the cornerstone of modern genomics. However, most existing sequence mapping algorithms are insufficiently general. Results: We introduce context sch…
q-bio.GN2014★ 38 cited
Mapping to a Reference Genome Structure
Benedict Paten, Adam Novak, David Haussler
To support comparative genomics, population genetics, and medical genetics, we propose that a reference genome should come with a scheme for mapping each base in any DNA string to…