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q-bio.PE2025★ 1 cited
Vector encoding of phylogenetic trees by ordered leaf attachment
Harry Richman, Cheng Zhang, Frederick A. Matsen
As part of work to connect phylogenetics with machine learning, there has been considerable recent interest in vector encodings of phylogenetic trees. We present a simple new "orde…
stat.ML2025
PhyloVAE: Unsupervised Learning of Phylogenetic Trees via Variational Autoencoders
Tianyu Xie, Harry Richman, Jiansi Gao +2
Learning informative representations of phylogenetic tree structures is essential for analyzing evolutionary relationships. Classical distance-based methods have been widely used t…