3 papers
q-bio.QM2022
A Clique-Based Method for Improving Motif Scanning Accuracy
Braslav Rabar, Keti Nižetić, Pavle Goldstein
We present a new approach for improving motif scanning accuracy, based on analysis of in-between similarity. Given a set of motifs obtained from a scanning process, we construct an…
q-bio.QM2018
IGLOSS: iterative gapless local similarity search
Braslav Rabar, Strahil Ristov, Maja Zagorščak +2
Searching for local sequence patterns is one of the basic tasks in bioinformatics. Sequence patterns might have structural, functional or some other relevance, and numerous methods…
math.DS2015
The transport speed and optimal work in pulsating Frenkel-Kontorova models
Braslav Rabar, Siniša Slijepčević
We consider a generalized one-dimensional chain in a periodic potential (the Frenkel-Kontorova model), with dissipative, pulsating (or ratchet) dynamics as a model of transport whe…