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cs.PL2026
Compiling Bioinformatics Recurrences
Bala Vinaithirthan, Shiv Sundram, Sneha Goenka +1
Many bioinformatics algorithms, such as sequence alignment and structure prediction, can be expressed as recurrence equations over a dynamic programming matrix. Efficient implement…
cs.PL2025
Cyclotron: Compilation of Recurrences to Distributed and Systolic Architectures
Shiv Sundram, Akhilesh Balasingam, Nathan Zhang +2
We present Cyclotron, a framework and compiler for using recurrence equations to express streaming dataflow algorithms, which then get portably compiled to distributed topologies o…