3.1k citations · 3.9k across the 25 of their papers we have counts for
25 papers
Inertial synchronization of networked oscillators in arbitrary dimensions
Kirill Kovalenko, Bruce X. Dai, Fanshu Fang +6
The Kuramoto model provides a paradigmatic framework for studying synchronization of interacting oscillators, and has been generalized to arbitrary dimensions to describe swarms, f…
Topological measures in weighted hypergraphs
Ekaterina Vasilyeva, Liubov Tupikina, Daniil Musatov +3
Higher-order interactions introduce an additional structural dimension to complex networks, requiring consistent generalizations of classical topological measures. In hypergraphs,…
Parenclitic hypergraphs and their application in personalized cancer therapy
K. K. H. Manjunatha, D. Aleja, F. Liu +16
Understanding the differences between individual instances of the same complex system remains a central challenge, particularly in biological contexts. Parenclitic networks constit…
Equitability and explosive synchronisation in multiplex and higher-order networks
Kirill Kovalenko, Gonzalo Contreras-Aso, Charo I. del Genio +2
Cluster synchronisation is a key phenomenon observed in networks of coupled dynamical units. Its presence has been linked to symmetry and, more generally, to equability of the unde…
Solitary states in spiking oscillators with higher-order interactions
Vladimir V. Semenov, Subhasanket Dutta, Stefano Boccaletti +3
We study a system of globally coupled FitzHugh-Nagumo oscillators, showing that the presence of higher-order interactions affects the character of the transition between synchronou…
Reconstructing simplicial complexes from evolutionary games
Yin-Jie Ma, Zhi-Qiang Jiang, Fanshu Fang +2
In distributed systems, knowledge of the network structure of the connections among the unitary components is often a requirement for an accurate prediction of the emerging collect…
Mean-field nature of synchronization stability in networks with multiple interaction layers
Charo I. del Genio, Sergio Faci-Lázaro, Jesús Gómez-Gardeñes +1
The interactions between the components of many real-world systems are best modelled by networks with multiple layers. Different theories have been proposed to explain how multilay…
The tetrazole analogue of the auxin indole-3-acetic acid binds preferentially to TIR1 and not AFB5
Mussa Quareshy, Justyna Prusinska, Martin Kieffer +9
Auxin is considered one of the cardinal hormones in plant growth and development. It regulates a wide range of processes throughout the plant. Synthetic auxins exploit the auxin-si…
Datamining a medieval medical text reveals patterns in ingredient choice that reflect biological activity against the causative agents of specified infections
Erin Connelly, Charo I. del Genio, Freya Harrison
The pharmacopeia used by physicians and lay people in medieval Europe has largely been dismissed as placebo or superstition. While we now recognise that some of the materia medica…
Finding network communities using modularity density
Federico Botta, Charo I. del Genio
Many real-world complex networks exhibit a community structure, in which the modules correspond to actual functional units. Identifying these communities is a key challenge for sci…
Synchronization in networks with multiple interaction layers
Charo I. del Genio, Jesús Gómez-Gardeñes, Ivan Bonamassa +1
The structure of many real-world systems is best captured by networks consisting of several interaction layers. Understanding how a multi-layered structure of connections affects t…
Tomographic docking suggests the mechanism of auxin receptor TIR1 selectivity
Veselina V. Uzunova, Mussa Quareshy, Charo I. del Genio +1
We study the binding of plant hormone IAA on its receptor TIR1 introducing a novel computational method that we call tomographic docking and that accounts for interactions occurrin…
Synchronization in dynamical networks with unconstrained structure switching
Charo I. del Genio, Miguel Romance, Regino Criado +1
We provide a rigorous solution to the problem of constructing a structural evolution for a network of coupled identical dynamical units that switches between specified topologies w…
Exact sampling of graphs with prescribed degree correlations
Kevin E. Bassler, Charo I. Del Genio, Péter L. Erdős +2
Many real-world networks exhibit correlations between the node degrees. For instance, in social networks nodes tend to connect to nodes of similar degree. Conversely, in biological…
Fast and accurate determination of modularity and its effect size
Santiago Treviño, Amy Nyberg, Charo I. Del Genio +1
We present a fast spectral algorithm for community detection in complex networks. Our method searches for the partition with the maximum value of the modularity via the interplay o…
Degree correlations in directed scale-free networks
Oliver Williams, Charo I. Del Genio
Scale-free networks, in which the distribution of the degrees obeys a power-law, are ubiquitous in the study of complex systems. One basic network property that relates to the stru…
The structure and dynamics of multilayer networks
S. Boccaletti, G. Bianconi, R. Criado +6
In the past years, network theory has successfully characterized the interaction among the constituents of a variety of complex systems, ranging from biological to technological, a…
Endemic infections are always possible on regular networks
Charo I. Del Genio, Thomas House
We study the dependence of the largest component in regular networks on the clustering coefficient, showing that its size changes smoothly without undergoing a phase transition. We…
Constructing and sampling directed graphs with given degree sequences
H. Kim, C. I. Del Genio, K. E. Bassler +1
The interactions between the components of complex networks are often directed. Proper modeling of such systems frequently requires the construction of ensembles of digraphs with a…
All scale-free networks are sparse
Charo I. Del Genio, Thilo Gross, Kevin E. Bassler
We study the realizability of scale free-networks with a given degree sequence, showing that the fraction of realizable sequences undergoes two first-order transitions at the value…
Phase Diagram for a 2-D Two-Temperature Diffusive XY Model
Matthew D. Reichl, Charo I. Del Genio, Kevin E. Bassler
Using Monte Carlo simulations, we determine the phase diagram of a diffusive two-temperature XY model. When the two temperatures are equal the system becomes the equilibrium XY mod…
Anomalous ordering in inhomogeneously strained materials
Charo I. Del Genio, Kevin E. Bassler
We study a continuous quasi-two-dimensional order-disorder phase transition that occurs in a simple model of a material that is inhomogeneously strained due to the presence of disl…
Efficient and exact sampling of simple graphs with given arbitrary degree sequence
Charo I. Del Genio, Hyunju Kim, Zoltan Toroczkai +1
Uniform sampling from graphical realizations of a given degree sequence is a fundamental component in simulation-based measurements of network observables, with applications rangin…
Depth-dependent ordering, two-length-scale phenomena and crossover behavior in a crystal featuring a skin-layer with defects
Charo I. Del Genio, Kevin E. Bassler, Aleksandr L. Korzhenevskii +4
Structural defects in a crystal are responsible for the "two length-scale" behavior, in which a sharp central peak is superimposed over a broad peak in critical diffuse X-ray scatt…