5 papers
SpecHD: Hyperdimensional Computing Framework for FPGA-based Mass Spectrometry Clustering
Sumukh Pinge, Weihong Xu, Jaeyoung Kang +4
Mass spectrometry-based proteomics is a key enabler for personalized healthcare, providing a deep dive into the complex protein compositions of biological systems. This technology…
NiemaGraphGen: A memory-efficient global-scale contact network simulation toolkit
Niema Moshiri
Epidemic simulations require the ability to sample contact networks from various random graph models. Existing methods can simulate city-scale or even country-scale contact network…
Ten Simple Rules for Attending Your First Conference
Elizabeth Leininger, Kelly Shaw, Niema Moshiri +3
Conferences are a mainstay of most scientific disciplines, where scientists of all career stages come together to share cutting-edge ideas and approaches. If you do research, chanc…
The dual-Barabási-Albert model
Niema Moshiri
The ability to sample random networks that can accurately represent real social contact networks is essential to the study of viral epidemics. The Barabási-Albert model and its ext…
Ten Simple Rules for Reproducible Research in Jupyter Notebooks
Adam Rule, Amanda Birmingham, Cristal Zuniga +8
Reproducibility of computational studies is a hallmark of scientific methodology. It enables researchers to build with confidence on the methods and findings of others, reuse and e…