2 papers
q-bio.SC2018
MCell-R: A particle-resolution network-free spatial modeling framework
Jose-Juan Tapia, Ali Sinan Saglam, Jacob Czech +4
Spatial heterogeneity can have dramatic effects on the biochemical networks that drive cell regulation and decision-making. For this reason, a number of methods have been developed…
q-bio.QM2018
Spatial Stochastic Modeling with MCell and CellBlender
Sanjana Gupta, Jacob Czech, Robert Kuczewski +4
This chapter provides a brief introduction to the theory and practice of spatial stochastic simulations. It begins with an overview of different methods available for biochemical s…