2 papers
q-bio.QM2022
BioSimulators: a central registry of simulation engines and services for recommending specific tools
Bilal Shaikh, Lucian P. Smith, Dan Vasilescu +68
Computational models have great potential to accelerate bioscience, bioengineering, and medicine. However, it remains challenging to reproduce and reuse simulations, in part, becau…
q-bio.SC2018
MCell-R: A particle-resolution network-free spatial modeling framework
Jose-Juan Tapia, Ali Sinan Saglam, Jacob Czech +4
Spatial heterogeneity can have dramatic effects on the biochemical networks that drive cell regulation and decision-making. For this reason, a number of methods have been developed…