7 citations · 8 across the 4 of their papers we have counts for
6 papers
Amplifying gene expression sensitivity by surface condensation on DNA
Tarek Tohme, Henry Alston, Jacqueline Janssen +2
Condensation of proteins on DNA is a central aspect of genome organisation, and has been proposed as a mechanism of gene regulation in eukaryotes, notably by mediating the action o…
Faster network motif discovery by counting isomorphic subtrees
Tarek Tohme, Joshua A. Grochow
We develop a new algorithm for counting the number of subgraphs of a network isomorphic to a given query graph (#SubgraphIsomorphism), motivated by network motif search. High-degre…
Fast decisions with biophysically constrained gene promoter architectures
Tarek Tohme, Massimo Vergassola, Thierry Mora +1
Cells integrate signals and make decisions about their future state in short amounts of time. A lot of theoretical effort has gone into asking how to best design gene regulatory ci…
Gambling Carnot Engine
Tarek Tohme, Valentina Bedoya, Costantino di Bello +3
We propose a theoretical model for a colloidal heat engine driven by a feedback protocol that is able to fully convert the net heat absorbed by the hot bath into extracted work. Th…
A brief tutorial on information theory
Tarek Tohme, William Bialek
At the 2023 Les Houches Summer School on Theoretical Biological Physics, several students asked for some background on information theory, and so we added a tutorial to the schedul…
Buildings as Species: Competition and Scaling Rules in Cities
Tarek Tohme, Martin Grant, Sara Najem
We look at buildings' competition over space in cities through the lens of ecology. Adopting the convex hull of the building's footprint perimeter as a definition of species yields…