82 citations · 84 across the 9 of their papers we have counts for
7 papers · 1 filter
Modulation-Reaction Networks
Leo Lobski, Yoàv Montacute
Biochemical systems involve both the flow of matter, in which entities transform into one another via reactions, and the flow of information, in which entities regulate which react…
Layered Monoidal Theories I: Diagrammatic Algebra and Applications
Leo Lobski, Fabio Zanasi
We develop layered monoidal theories -- a generalisation of monoidal theories combining formal descriptions of a system at different levels of abstraction. Via their representation…
Layered Monoidal Theories
Leo Lobski
In the first part, we develop layered monoidal theories - a generalisation of monoidal theories combining descriptions of a system at several levels. Via their representation as st…
Disconnection Rules are Complete for Chemical Reactions
Ella Gale, Leo Lobski, Fabio Zanasi
We provide a category theoretical framework capturing two approaches to graph-based models of chemistry: formal reactions and disconnection rules. We model a translation from the l…
Learning Closed Signal Flow Graphs
Ekaterina Piotrovskaya, Leo Lobski, Fabio Zanasi
We develop a learning algorithm for closed signal flow graphs - a graphical model of signal transducers. The algorithm relies on the correspondence between closed signal flow graph…
A Categorical Model for Retrosynthetic Reaction Analysis
Ella Gale, Leo Lobski, Fabio Zanasi
We introduce a mathematical framework for retrosynthetic analysis, an important research method in synthetic chemistry. Our approach represents molecules and their interaction usin…
String Diagrams for Layered Explanations
Leo Lobski, Fabio Zanasi
We propose a categorical framework to reason about scientific explanations: descriptions of a phenomenon meant to translate it into simpler terms, or into a context that has been a…