activity
20132022
most citedSparse and compositionally robust inference of microbial ecological networks

2k citations · 2.5k across the 5 of their papers we have counts for

collaborators

5 papers

cs.CL2022

Dictionary-Assisted Supervised Contrastive Learning

Patrick Y. Wu, Richard Bonneau, Joshua A. Tucker +1

Text analysis in the social sciences often involves using specialized dictionaries to reason with abstract concepts, such as perceptions about the economy or abuse on social media.…

cs.SI2020★ 42 cited

YouTube Recommendations and Effects on Sharing Across Online Social Platforms

Cody Buntain, Richard Bonneau, Jonathan Nagler +1

In January 2019, YouTube announced it would exclude potentially harmful content from video recommendations but allow such videos to remain on the platform. While this step intends…

stat.ME2016★ 23 cited

Generalized Stability Approach for Regularized Graphical Models

Christian L. Müller, Richard Bonneau, Zachary Kurtz

Selecting regularization parameters in penalized high-dimensional graphical models in a principled, data-driven, and computationally efficient manner continues to be one of the key…

stat.AP2014★ 2k cited

Sparse and compositionally robust inference of microbial ecological networks

Zachary D. Kurtz, Christian L. Mueller, Emily R. Miraldi +3

16S-ribosomal sequencing and other metagonomic techniques provide snapshots of microbial communities, revealing phylogeny and the abundances of microbial populations across diverse…

q-bio.QM2013★ 473 cited

Serverification of Molecular Modeling Applications: the Rosetta Online Server that Includes Everyone (ROSIE)

Sergey Lyskov, Fang-Chieh Chou, Shane Ó Conchúir +14

The Rosetta molecular modeling software package provides experimentally tested and rapidly evolving tools for the 3D structure prediction and high-resolution design of proteins, nu…