60 citations · 100 across the 4 of their papers we have counts for
4 papers · 1 filter
ntLink: a toolkit for de novo genome assembly scaffolding and mapping using long reads
Lauren Coombe, René L. Warren, Johnathan Wong +2
With the increasing affordability and accessibility of genome sequencing data, de novo genome assembly is an important first step to a wide variety of downstream studies and analys…
GapPredict: A Language Model for Resolving Gaps in Draft Genome Assemblies
Eric Chen, Justin Chu, Jessica Zhang +2
Short-read DNA sequencing instruments can yield over 1e+12 bases per run, typically composed of reads 150 bases long. Despite this high throughput, de novo assembly algorithms have…
Interactive SARS-CoV-2 mutation timemaps
Rene L. Warren, Inanc Birol
As the year 2020 draws to an end, several new strains have been reported for the SARS-CoV-2 coronavirus, the agent responsible for the COVID-19 pandemic that has afflicted us all t…
HLA predictions from the bronchoalveolar lavage fluid samples of five patients at the early stage of the Wuhan seafood market COVID-19 outbreak
Rene L Warren, Inanc Birol
We are in the midst of a global viral pandemic, one with no cure and a high mortality rate. The Human Leukocyte Antigen (HLA) gene complex plays a critical role in host immunity. W…