7 citations · 8 across the 4 of their papers we have counts for
5 papers
HLA predictions from long sequence read alignments, streamed directly into HLAminer
René L. Warren
The rapidly changing landscape of sequencing technologies brings new opportunities to genomics research. Longer sequence reads and higher sequence throughput coupled with ever-impr…
PASS: De novo assembler for short peptide sequences
René L. Warren
The ability to characterize proteins at sequence-level resolution is vital to biological research. Currently, the leading method for protein sequencing is by liquid chromatography…
GapPredict: A Language Model for Resolving Gaps in Draft Genome Assemblies
Eric Chen, Justin Chu, Jessica Zhang +2
Short-read DNA sequencing instruments can yield over 1e+12 bases per run, typically composed of reads 150 bases long. Despite this high throughput, de novo assembly algorithms have…
Interactive SARS-CoV-2 mutation timemaps
Rene L. Warren, Inanc Birol
As the year 2020 draws to an end, several new strains have been reported for the SARS-CoV-2 coronavirus, the agent responsible for the COVID-19 pandemic that has afflicted us all t…
HLA predictions from the bronchoalveolar lavage fluid samples of five patients at the early stage of the Wuhan seafood market COVID-19 outbreak
Rene L Warren, Inanc Birol
We are in the midst of a global viral pandemic, one with no cure and a high mortality rate. The Human Leukocyte Antigen (HLA) gene complex plays a critical role in host immunity. W…