372 citations · 1.1k across the 17 of their papers we have counts for
19 papers
VOLMO: Versatile and Open Large Models for Ophthalmology
Zhenyue Qin, Younjoon Chung, Elijah Lee +16
Vision impairment affects millions globally, and early detection is critical to preventing irreversible vision loss. Ophthalmology workflows require clinicians to integrate medical…
LMOD+: A Comprehensive Multimodal Dataset and Benchmark for Developing and Evaluating Multimodal Large Language Models in Ophthalmology
Zhenyue Qin, Yang Liu, Yu Yin +13
Vision-threatening eye diseases pose a major global health burden, with timely diagnosis limited by workforce shortages and restricted access to specialized care. While multimodal…
Memorization in Large Language Models in Medicine: Prevalence, Characteristics, and Implications
Anran Li, Lingfei Qian, Mengmeng Du +18
Large Language Models (LLMs) have demonstrated significant potential in medicine, with many studies adapting them through continued pre-training or fine-tuning on medical data to e…
Enhancing Large Language Models with Domain-specific Retrieval Augment Generation: A Case Study on Long-form Consumer Health Question Answering in Ophthalmology
Aidan Gilson, Xuguang Ai, Thilaka Arunachalam +19
Despite the potential of Large Language Models (LLMs) in medicine, they may generate responses lacking supporting evidence or based on hallucinated evidence. While Retrieval Augmen…
AI Workflow, External Validation, and Development in Eye Disease Diagnosis
Qingyu Chen, Tiarnan D L Keenan, Elvira Agron +35
Timely disease diagnosis is challenging due to increasing disease burdens and limited clinician availability. AI shows promise in diagnosis accuracy but faces real-world applicatio…
Ascle: A Python Natural Language Processing Toolkit for Medical Text Generation
Rui Yang, Qingcheng Zeng, Keen You +13
This study introduces Ascle, a pioneering natural language processing (NLP) toolkit designed for medical text generation. Ascle is tailored for biomedical researchers and healthcar…
A scoping review on multimodal deep learning in biomedical images and texts
Zhaoyi Sun, Mingquan Lin, Qingqing Zhu +4
Computer-assisted diagnostic and prognostic systems of the future should be capable of simultaneously processing multimodal data. Multimodal deep learning (MDL), which involves the…
MedCPT: Contrastive Pre-trained Transformers with Large-scale PubMed Search Logs for Zero-shot Biomedical Information Retrieval
Qiao Jin, Won Kim, Qingyu Chen +4
Information retrieval (IR) is essential in biomedical knowledge acquisition and clinical decision support. While recent progress has shown that language model encoders perform bett…
BioREx: Improving Biomedical Relation Extraction by Leveraging Heterogeneous Datasets
Po-Ting Lai, Chih-Hsuan Wei, Ling Luo +2
Biomedical relation extraction (RE) is the task of automatically identifying and characterizing relations between biomedical concepts from free text. RE is a central task in biomed…
Opportunities and Challenges for ChatGPT and Large Language Models in Biomedicine and Health
Shubo Tian, Qiao Jin, Lana Yeganova +11
ChatGPT has drawn considerable attention from both the general public and domain experts with its remarkable text generation capabilities. This has subsequently led to the emergenc…
Utilizing Longitudinal Chest X-Rays and Reports to Pre-Fill Radiology Reports
Qingqing Zhu, Tejas Sudharshan Mathai, Pritam Mukherjee +3
Despite the reduction in turn-around times in radiology reports with the use of speech recognition software, persistent communication errors can significantly impact the interpreta…
GeneGPT: Augmenting Large Language Models with Domain Tools for Improved Access to Biomedical Information
Qiao Jin, Yifan Yang, Qingyu Chen +1
While large language models (LLMs) have been successfully applied to various tasks, they still face challenges with hallucinations. Augmenting LLMs with domain-specific tools such…
Benchmarking large language models for biomedical natural language processing applications and recommendations
Qingyu Chen, Yan Hu, Xueqing Peng +18
The rapid growth of biomedical literature poses challenges for manual knowledge curation and synthesis. Biomedical Natural Language Processing (BioNLP) automates the process. While…
Improving Large Language Models for Clinical Named Entity Recognition via Prompt Engineering
Yan Hu, Qingyu Chen, Jingcheng Du +9
Objective: This study quantifies the capabilities of GPT-3.5 and GPT-4 for clinical named entity recognition (NER) tasks and proposes task-specific prompts to improve their perform…
Interpretable Medical Image Visual Question Answering via Multi-Modal Relationship Graph Learning
Xinyue Hu, Lin Gu, Kazuma Kobayashi +6
Medical visual question answering (VQA) aims to answer clinically relevant questions regarding input medical images. This technique has the potential to improve the efficiency of m…
Bioformer: an efficient transformer language model for biomedical text mining
Li Fang, Qingyu Chen, Chih-Hsuan Wei +2
Pretrained language models such as Bidirectional Encoder Representations from Transformers (BERT) have achieved state-of-the-art performance in natural language processing (NLP) ta…
Perceiving and Modeling Density is All You Need for Image Dehazing
Tian Ye, Mingchao Jiang, Yunchen Zhang +4
In the real world, the degradation of images taken under haze can be quite complex, where the spatial distribution of haze is varied from image to image. Recent methods adopt deep…
SDWNet: A Straight Dilated Network with Wavelet Transformation for Image Deblurring
Wenbin Zou, Mingchao Jiang, Yunchen Zhang +3
Image deblurring is a classical computer vision problem that aims to recover a sharp image from a blurred image. To solve this problem, existing methods apply the Encode-Decode arc…
COVID-19-CT-CXR: a freely accessible and weakly labeled chest X-ray and CT image collection on COVID-19 from biomedical literature
Yifan Peng, Yu-Xing Tang, Sungwon Lee +3
The latest threat to global health is the COVID-19 outbreak. Although there exist large datasets of chest X-rays (CXR) and computed tomography (CT) scans, few COVID-19 image collec…