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q-bio.QM2022
Small Coupling Expansion for Multiple Sequence Alignment
Louise Budzynski, Andrea Pagnani
The alignment of biological sequences such as DNA, RNA, and proteins, is one of the basic tools that allow to detect evolutionary patterns, as well as functional/structural charact…
cond-mat.dis-nn2022
The closest vector problem and the zero-temperature p-spin landscape for lossy compression
Alfredo Braunstein, Louise Budzynski, Stefano Crotti +1
We consider a high-dimensional random constrained optimization problem in which a set of binary variables is subjected to a linear system of equations. The cost function is a simpl…