6k citations · 6k across the 2 of their papers we have counts for
2 papers
q-bio.GN2022★ 7 cited
Fast sequence to graph alignment using the graph wavefront algorithm
Haowen Zhang, Shiqi Wu, Srinivas Aluru +1
Motivation: A pan-genome graph represents a collection of genomes and encodes sequence variations between them. It is a powerful data structure for studying multiple similar genome…
q-bio.GN2020★ 6k cited
Haplotype-resolved de novo assembly with phased assembly graphs
Haoyu Cheng, Gregory T Concepcion, Xiaowen Feng +2
Haplotype-resolved de novo assembly is the ultimate solution to the study of sequence variations in a genome. However, existing algorithms either collapse heterozygous alleles into…