14 citations · 16 across the 2 of their papers we have counts for
4 papers
AnySeq/GPU: A Novel Approach for Faster Sequence Alignment on GPUs
André Müller, Bertil Schmidt, Richard Membarth +2
In recent years, the rapidly increasing number of reads produced by next-generation sequencing (NGS) technologies has driven the demand for efficient implementations of sequence al…
MetaCache-GPU: Ultra-Fast Metagenomic Classification
Robin Kobus, André Müller, Daniel Jünger +2
The cost of DNA sequencing has dropped exponentially over the past decade, making genomic data accessible to a growing number of scientists. In bioinformatics, localization of shor…
WarpCore: A Library for fast Hash Tables on GPUs
Daniel Jünger, Robin Kobus, André Müller +4
Hash tables are ubiquitous. Properties such as an amortized constant time complexity for insertion and querying as well as a compact memory layout make them versatile associative d…
AnySeq: A High Performance Sequence Alignment Library based on Partial Evaluation
André Müller, Bertil Schmidt, Andreas Hildebrandt +4
Sequence alignments are fundamental to bioinformatics which has resulted in a variety of optimized implementations. Unfortunately, the vast majority of them are hand-tuned and spec…