116 citations · 183 across the 5 of their papers we have counts for
6 papers
FAIR sharing of Chromatin Tracing datasets using the newly developed 4DN FISH Omics Format
Rahi Navelkar, Andrea Cosolo, Bogdan Bintu +35
In recent years, multiplexed Fluorescence In Situ Hybridization (FISH) or FISH-omics methods have rapidly expanded, enabling the quantification of chromatin organization in single…
MITI Minimum Information guidelines for highly multiplexed tissue images
Denis Schapiro, Clarence Yapp, Artem Sokolov +36
The imminent release of tissue atlases combining multi-channel microscopy with single cell sequencing and other omics data from normal and diseased specimens creates an urgent need…
Essential Metadata for 3D BRAIN Microscopy
Alexander J. Ropelewski, Megan A. Rizzo, Jason R. Swedlow +14
Recent advances in fluorescence microscopy techniques and tissue clearing, labeling, and staining provide unprecedented opportunities to investigate brain structure and function. T…
QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy
Glyn Nelson, Ulrike Boehm, Steve Bagley +97
In April 2020, the QUality Assessment and REProducibility for Instruments and Images in Light Microscopy (QUAREP-LiMi) initiative was formed. This initiative comprises imaging scie…
A Global View of Standards for Open Image Data Formats and Repositories
Jason R. Swedlow, Pasi Kankaanpää, Ugis Sarkans +11
Biological and biomedical imaging datasets record the constitution, architecture and dynamics of living organisms across several orders of magnitude of space and time. Imaging tech…
Public archives for biological image data
Jan Ellenberg, Jason R Swedlow, Mary Barlow +4
Public data archives are the backbone of modern biological and biomedical research. While archives for biological molecules and structures are well-established, resources for imagi…