3 papers
q-bio.NC2020
Lamina-specific neuronal properties promote robust, stable signal propagation in feedforward networks
Dongqi Han, Erik De Schutter, Sungho Hong
Feedforward networks (FFN) are ubiquitous structures in neural systems and have been studied to understand mechanisms of reliable signal and information transmission. In many FFNs,…
q-bio.QM2016
Parallel STEPS: Large Scale Stochastic Spatial Reaction-Diffusion Simulation with High Performance Computers
Weiliang Chen, Erik De Schutter
Stochastic, spatial reaction-diffusion simulations have been widely used in systems biology and computational neuroscience. However, the increasing scale and complexity of simulate…
q-bio.QM2015
Accurate Reaction-Diffusion Operator Splitting on Tetrahedral Meshes for Parallel Stochastic Molecular Simulations
I. Hepburn, W. Chen, E. De Schutter
Spatial stochastic molecular simulations in biology are limited by the intense computation required to track molecules in space either in a discrete time or discrete space framewor…