3 citations · 4 across the 3 of their papers we have counts for
4 papers
TraitLab: a Matlab package for fitting and simulating binary tree-like data
Luke J. Kelly, Geoff K. Nicholls, Robin J. Ryder +1
TraitLab is a software package for simulating, fitting and analysing tree-like binary data under a stochastic Dollo model of evolution. The model also allows for rate heterogeneity…
Lagged couplings diagnose Markov chain Monte Carlo phylogenetic inference
Luke J. Kelly, Robin J. Ryder, Grégoire Clarté
Phylogenetic inference is an intractable statistical problem on a complex space. Markov chain Monte Carlo methods are the primary tool for Bayesian phylogenetic inference but it is…
Sequential knockoffs for continuous and categorical predictors: with application to a large Psoriatic Arthritis clinical trial pool
Matthias Kormaksson, Luke J. Kelly, Xuan Zhu +3
Knockoffs provide a general framework for controlling the false discovery rate when performing variable selection. Much of the Knockoffs literature focuses on theoretical challenge…
Lateral transfer in Stochastic Dollo models
Luke J. Kelly, Geoff K. Nicholls
Lateral transfer, a process whereby species exchange evolutionary traits through non-ancestral relationships, is a frequent source of model misspecification in phylogenetic inferen…