97 citations · 140 across the 35 of their papers we have counts for
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Quantitative Benchmarking of Anomaly Detection Methods in Digital Pathology
Can Cui, Xindong Zheng, Ruining Deng +8
Anomaly detection has been widely studied in the context of industrial defect inspection, with numerous methods developed to tackle a range of challenges. In digital pathology, ano…
Expanding Training Data for Endoscopic Phenotyping of Eosinophilic Esophagitis
Juming Xiong, Hou Xiong, Quan Liu +4
Eosinophilic esophagitis (EoE) is a chronic esophageal disorder marked by eosinophil-dominated inflammation. Diagnosing EoE usually involves endoscopic inspection of the esophageal…
Glo-In-One-v2: Holistic Identification of Glomerular Cells, Tissues, and Lesions in Human and Mouse Histopathology
Lining Yu, Mengmeng Yin, Ruining Deng +9
Segmenting glomerular intraglomerular tissue and lesions traditionally depends on detailed morphological evaluations by expert nephropathologists, a labor-intensive process suscept…
Assessment of Cell Nuclei AI Foundation Models in Kidney Pathology
Junlin Guo, Siqi Lu, Can Cui +14
Cell nuclei instance segmentation is a crucial task in digital kidney pathology. Traditional automatic segmentation methods often lack generalizability when applied to unseen datas…
HoloHisto: End-to-end Gigapixel WSI Segmentation with 4K Resolution Sequential Tokenization
Yucheng Tang, Yufan He, Vishwesh Nath +11
In digital pathology, the traditional method for deep learning-based image segmentation typically involves a two-stage process: initially segmenting high-resolution whole slide ima…
GLAM: Glomeruli Segmentation for Human Pathological Lesions using Adapted Mouse Model
Lining Yu, Mengmeng Yin, Ruining Deng +9
Moving from animal models to human applications in preclinical research encompasses a broad spectrum of disciplines in medical science. A fundamental element in the development of…
Dataset Distillation in Medical Imaging: A Feasibility Study
Muyang Li, Can Cui, Quan Liu +4
Data sharing in the medical image analysis field has potential yet remains underappreciated. The aim is often to share datasets efficiently with other sites to train models effecti…
HATs: Hierarchical Adaptive Taxonomy Segmentation for Panoramic Pathology Image Analysis
Ruining Deng, Quan Liu, Can Cui +10
Panoramic image segmentation in computational pathology presents a remarkable challenge due to the morphologically complex and variably scaled anatomy. For instance, the intricate…
PrPSeg: Universal Proposition Learning for Panoramic Renal Pathology Segmentation
Ruining Deng, Quan Liu, Can Cui +11
Understanding the anatomy of renal pathology is crucial for advancing disease diagnostics, treatment evaluation, and clinical research. The complex kidney system comprises various…
Democratizing Pathological Image Segmentation with Lay Annotators via Molecular-empowered Learning
Ruining Deng, Yanwei Li, Peize Li +11
Multi-class cell segmentation in high-resolution Giga-pixel whole slide images (WSI) is critical for various clinical applications. Training such an AI model typically requires lab…
Segment Anything Model (SAM) for Digital Pathology: Assess Zero-shot Segmentation on Whole Slide Imaging
Ruining Deng, Can Cui, Quan Liu +13
The segment anything model (SAM) was released as a foundation model for image segmentation. The promptable segmentation model was trained by over 1 billion masks on 11M licensed an…
Scaling Up 3D Kernels with Bayesian Frequency Re-parameterization for Medical Image Segmentation
Ho Hin Lee, Quan Liu, Shunxing Bao +7
With the inspiration of vision transformers, the concept of depth-wise convolution revisits to provide a large Effective Receptive Field (ERF) using Large Kernel (LK) sizes for med…
Omni-Seg: A Single Dynamic Network for Multi-label Renal Pathology Image Segmentation using Partially Labeled Data
Ruining Deng, Quan Liu, Can Cui +3
Computer-assisted quantitative analysis on Giga-pixel pathology images has provided a new avenue in histology examination. The innovations have been largely focused on cancer patho…
ASIST: Annotation-free synthetic instance segmentation and tracking for microscope video analysis
Quan Liu, Isabella M. Gaeta, Mengyang Zhao +6
Instance object segmentation and tracking provide comprehensive quantification of objects across microscope videos. The recent single-stage pixel-embedding based deep learning appr…