9 citations · 13 across the 6 of their papers we have counts for
6 papers
AMix-1: A Pathway to Test-Time Scalable Protein Foundation Model
Changze Lv, Jiang Zhou, Siyu Long +22
We introduce AMix-1, a powerful protein foundation model built on Bayesian Flow Networks and empowered by a systematic training methodology, encompassing pretraining scaling laws,…
Steering Protein Family Design through Profile Bayesian Flow
Jingjing Gong, Yu Pei, Siyu Long +7
Protein family design emerges as a promising alternative by combining the advantages of de novo protein design and mutation-based directed evolution.In this paper, we propose Profi…
ESM All-Atom: Multi-scale Protein Language Model for Unified Molecular Modeling
Kangjie Zheng, Siyu Long, Tianyu Lu +6
Protein language models have demonstrated significant potential in the field of protein engineering. However, current protein language models primarily operate at the residue scale…
BED: Bi-Encoder-Decoder Model for Canonical Relation Extraction
Nantao Zheng, Siyu Long, Xinyu Dai
Canonical relation extraction aims to extract relational triples from sentences, where the triple elements (entity pairs and their relationship) are mapped to the knowledge base. R…
Zero-Shot 3D Drug Design by Sketching and Generating
Siyu Long, Yi Zhou, Xinyu Dai +1
Drug design is a crucial step in the drug discovery cycle. Recently, various deep learning-based methods design drugs by generating novel molecules from scratch, avoiding traversin…
Synonym Knowledge Enhanced Reader for Chinese Idiom Reading Comprehension
Siyu Long, Ran Wang, Kun Tao +2
Machine reading comprehension (MRC) is the task that asks a machine to answer questions based on a given context. For Chinese MRC, due to the non-literal and non-compositional sema…