110 citations · 125 across the 7 of their papers we have counts for
7 papers
Are You Learning Biological Signal or Shortcuts? Auditing and Mitigating Bias in Protein-Protein Interaction Datasets
Judith Bernett, Anton Spannagl, Joel Ås +2
Protein-protein interaction (PPI) databases do not faithfully reflect biological realities. Instead, they are influenced by study and technical biases that distort certain protein…
Conversational No-code, Multi-agentic Disease Module Identification and Drug Repurposing Prediction with ChatDRex
Simon Süwer, Kester Bagemihl, Sylvie Baier +5
Repurposing approved drugs offers a time-efficient and cost-effective alternative to traditional drug development. However, in silico prediction of repurposing candidates is challe…
Drugst.One -- A plug-and-play solution for online systems medicine and network-based drug repurposing
Andreas Maier, Michael Hartung, Mark Abovsky +36
In recent decades, the development of new drugs has become increasingly expensive and inefficient, and the molecular mechanisms of most pharmaceuticals remain poorly understood. In…
The FeatureCloud AI Store for Federated Learning in Biomedicine and Beyond
Julian Matschinske, Julian Späth, Reza Nasirigerdeh +29
Machine Learning (ML) and Artificial Intelligence (AI) have shown promising results in many areas and are driven by the increasing amount of available data. However, this data is o…
Flimma: a federated and privacy-preserving tool for differential gene expression analysis
Olga Zolotareva, Reza Nasirigerdeh, Julian Matschinske +9
Aggregating transcriptomics data across hospitals can increase sensitivity and robustness of differential expression analyses, yielding deeper clinical insights. As data exchange i…
Federated Multi-Mini-Batch: An Efficient Training Approach to Federated Learning in Non-IID Environments
Reza Nasirigerdeh, Mohammad Bakhtiari, Reihaneh Torkzadehmahani +4
Federated learning has faced performance and network communication challenges, especially in the environments where the data is not independent and identically distributed (IID) ac…
Privacy-preserving Artificial Intelligence Techniques in Biomedicine
Reihaneh Torkzadehmahani, Reza Nasirigerdeh, David B. Blumenthal +22
Artificial intelligence (AI) has been successfully applied in numerous scientific domains. In biomedicine, AI has already shown tremendous potential, e.g. in the interpretation of…