5 papers
DiPhon: Diffusion on Graphons for Scalable Graph Generation
Sergio Rozada, Yiming Qin, Manuel Madeira +2
Diffusion models represent a leading paradigm for graph generation, with notable impact in domains such as molecular design. Yet, scaling these models to large graphs remains an op…
Generating Directed Graphs with Dual Attention and Asymmetric Encoding
Alba Carballo-Castro, Manuel Madeira, Yiming Qin +2
Directed graphs naturally model systems with asymmetric, ordered relationships, essential to applications in biology, transportation, social networks, and visual understanding. Gen…
Revisiting Automatic Data Curation for Vision Foundation Models in Digital Pathology
Boqi Chen, Cédric Vincent-Cuaz, Lydia A. Schoenpflug +12
Vision foundation models (FMs) are accelerating the development of digital pathology algorithms and transforming biomedical research. These models learn, in a self-supervised manne…
DeFoG: Discrete Flow Matching for Graph Generation
Yiming Qin, Manuel Madeira, Dorina Thanou +1
Graph generative models are essential across diverse scientific domains by capturing complex distributions over relational data. Among them, graph diffusion models achieve superior…
Generative Modelling of Structurally Constrained Graphs
Manuel Madeira, Clement Vignac, Dorina Thanou +1
Graph diffusion models have emerged as state-of-the-art techniques in graph generation; yet, integrating domain knowledge into these models remains challenging. Domain knowledge is…