5 citations · 6 across the 5 of their papers we have counts for
6 papers
Benchmarking Literature Retrieval for a Model Organism: A Dictyostelium Case Study
Yun Wang, Gad Shaulsky, Tomaž Curk +1
Biological literature retrieval systems are often developed and evaluated using broad biomedical corpora and general-purpose search tasks. However, many curated knowledge bases ope…
Few-Shot Biomedical Relation Extraction with Large Language Models: A Viable Alternative to Supervised Learning?
Jakob Mraz, Tomaž Curk, Blaž Zupan
Biomedical relation extraction (BioRE) is a key step in transforming biomedical literature into structured knowledge. Most existing approaches rely on supervised models trained on…
Automated Assignment Grading with Large Language Models: Insights From a Bioinformatics Course
Pavlin G. Poličar, Martin Špendl, Tomaž Curk +1
Providing students with individualized feedback through assignments is a cornerstone of education that supports their learning and development. Studies have shown that timely, high…
Matrix tri-factorization over the tropical semiring
Amra Omanović, Polona Oblak, Tomaž Curk
Tropical semiring has proven successful in several research areas, including optimal control, bioinformatics, discrete event systems, or solving a decision problem. In previous stu…
Open Data and Quantitative Techniques for Anthropology of Road Traffic
Ajda Pretnar Žagar, Tomaž Hočevar, Tomaž Curk
What kind of questions about human mobility can computational analysis help answer? How to translate the findings into anthropology? We analyzed a publicly available data set of ro…
Data embedding and prediction by sparse tropical matrix factorization
Amra Omanović, Hilal Kazan, Polona Oblak +1
Matrix factorization methods are linear models, with limited capability to model complex relations. In our work, we use tropical semiring to introduce non-linearity into matrix fac…