101 citations · 409 across the 32 of their papers we have counts for
8 papers · 1 filter
Uncovering Neural Scaling Laws in Molecular Representation Learning
Dingshuo Chen, Yanqiao Zhu, Jieyu Zhang +5
Molecular Representation Learning (MRL) has emerged as a powerful tool for drug and materials discovery in a variety of tasks such as virtual screening and inverse design. While th…
On Separate Normalization in Self-supervised Transformers
Xiaohui Chen, Yinkai Wang, Yuanqi Du +2
Self-supervised training methods for transformers have demonstrated remarkable performance across various domains. Previous transformer-based models, such as masked autoencoders (M…
Artificial Intelligence for Science in Quantum, Atomistic, and Continuum Systems
Xuan Zhang, Limei Wang, Jacob Helwig +60
Advances in artificial intelligence (AI) are fueling a new paradigm of discoveries in natural sciences. Today, AI has started to advance natural sciences by improving, accelerating…
MHub: Unlocking the Potential of Machine Learning for Materials Discovery
Yuanqi Du, Yingheng Wang, Yining Huang +6
We introduce MHub, a toolkit for advancing machine learning in materials discovery. Machine learning has achieved remarkable progress in modeling molecular structures, especial…
MUBen: Benchmarking the Uncertainty of Molecular Representation Models
Yinghao Li, Lingkai Kong, Yuanqi Du +4
Large molecular representation models pre-trained on massive unlabeled data have shown great success in predicting molecular properties. However, these models may tend to overfit t…
A new perspective on building efficient and expressive 3D equivariant graph neural networks
Weitao Du, Yuanqi Du, Limei Wang +5
Geometric deep learning enables the encoding of physical symmetries in modeling 3D objects. Despite rapid progress in encoding 3D symmetries into Graph Neural Networks (GNNs), a co…
Accurate transition state generation with an object-aware equivariant elementary reaction diffusion model
Chenru Duan, Yuanqi Du, Haojun Jia +1
Transition state (TS) search is key in chemistry for elucidating reaction mechanisms and exploring reaction networks. The search for accurate 3D TS structures, however, requires nu…
Xtal2DoS: Attention-based Crystal to Sequence Learning for Density of States Prediction
Junwen Bai, Yuanqi Du, Yingheng Wang +3
Modern machine learning techniques have been extensively applied to materials science, especially for property prediction tasks. A majority of these methods address scalar property…