3 papers
q-bio.BM2022
Experimental design for causal query estimation in partially observed biomolecular networks
Sara Mohammad-Taheri, Vartika Tewari, Rohan Kapre +5
Estimating a causal query from observational data is an essential task in the analysis of biomolecular networks. Estimation takes as input a network topology, a query estimation me…
cs.LG2021
Do-calculus enables estimation of causal effects in partially observed biomolecular pathways
Sara Mohammad-Taheri, Jeremy Zucker, Charles Tapley Hoyt +4
Estimating causal queries, such as changes in protein abundance in response to a perturbation, is a fundamental task in the analysis of biomolecular pathways. The estimation requir…
q-bio.QM2021
Leveraging Structured Biological Knowledge for Counterfactual Inference: a Case Study of Viral Pathogenesis
Jeremy Zucker, Kaushal Paneri, Sara Mohammad-Taheri +8
Counterfactual inference is a useful tool for comparing outcomes of interventions on complex systems. It requires us to represent the system in form of a structural causal model, c…