68 citations · 156 across the 3 of their papers we have counts for
3 papers
Homogeneous nucleation under shear in a two-dimensional Ising model: cluster growth, coalescence and breakup
Rosalind J. Allen, Chantal Valeriani, Sorin Tanase-Nicola +2
We compute rates and pathways for nucleation in a sheared two dimensional Ising model with Metropolis spin flip dynamics, using Forward Flux Sampling (FFS). We find a peak in the n…
Eliminating fast reactions in stochastic simulations of biochemical networks: a bistable genetic switch
M. J. Morelli, R. J. Allen, S. Tanase-Nicola +1
In many stochastic simulations of biochemical reaction networks, it is desirable to ``coarse-grain'' the reaction set, removing fast reactions while retaining the correct system dy…
Reaction coordinates for the flipping of genetic switches
M. J. Morelli, S. Tanase-Nicola, R. J. Allen +1
We present a detailed analysis, based on the Forward Flux Sampling (FFS) simulation method, of the switching dynamics and stability of two models of genetic toggle switches, consis…