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physics.chem-ph2024
Potential Distribution Theory of Alchemical Transfer
Solmaz Azimi, Emilio Gallicchio
We present an analytical description of the Alchemical Transfer Method (ATM) for molecular binding using the Potential Distribution Theory (PDT) formalism. ATM models the binding f…
physics.chem-ph2024★ 1 cited
Binding Selectivity Analysis from Alchemical Receptor Hopping and Swapping Free Energy Calculations
Solmaz Azimi, Emilio Gallicchio
We present receptor hopping and receptor swapping free energy estimation protocols based on the Alchemical Transfer Method (ATM) to model the binding selectivity of a set of ligand…