57 citations · 92 across the 10 of their papers we have counts for
10 papers
Milestoning Markov-jump dynamics: Stationary properties, thermodynamic consistency, kinetic hysteresis, and fluctuation symmetries
Tassilo Schwarz, David Hartich, Aljaž Godec
We derive an exact coarse graining of generic Markov-jump processes into observable semi-Markov dynamics. Exact results for waiting-time distributions for jumps between observable…
Stochastic Calculus for Pathwise Observables of Markov-Jump Processes: Unification of Diffusion and Jump Dynamics
Lars Torbjørn Stutzer, Cai Dieball, Aljaž Godec
Path-wise observables--functionals of stochastic trajectories--are at the heart of time-average statistical mechanics and are central to thermodynamic inequalities such as uncertai…
Consistent time reversal and reliable and accurate inference in the presence of memory
Tassilo Schwarz, Anatoly B. Kolomeisky, Aljaž Godec
Thermodynamic inference from coarse observations remains a key challenge. Memory, in particular correlations between consecutively observed mesostates, blur signatures of irreversi…
The allosteric lever: towards a principle of specific allosteric response
Maximilian Vossel, Bert L. de Groot, Aljaž Godec
Allostery, the phenomenon by which the perturbation of a molecule at one site alters its behavior at a remote functional site, enables control over biomolecular function. Allosteri…
Vorticity and level-set variations of invariant current bound steady-state dissipation
Hao De, Aljaž Godec
A non-vanishing entropy production rate is a hallmark of non-equilibrium stationary states and is therefore at the heart of non-equilibrium thermodynamics. It is a manifestation of…
Heating and Cooling are Fundamentally Asymmetric and Evolve Along Distinct Pathways
Miguel Ibáñez, Cai Dieball, Antonio Lasanta +2
According to conventional wisdom, a system placed in an environment with a different temperature tends to relax to the temperature of the latter, mediated by the flows of heat and/…
Global Speed Limit for Finite-Time Dynamical Phase Transition and Nonequilibrium Relaxation
Kristian Blom, Aljaž Godec
Recent works unraveled an intriguing finite-time dynamical phase transition in the thermal relaxation of the mean field Curie-Weiss model. The phase transition reflects a sudden sw…
Thermodynamically Consistent Phase-Field Theory Including Nearest-Neighbor Pair Correlations Explains Failure of Mean-Field Reasoning
Kristian Blom, Noah Ziethen, David Zwicker +1
Most of our current understanding of phase separation is based on ideas that disregard correlaions. Here we illuminate unexpected effects of correlations on the structure and therm…
Ubiquitous Dynamical Time Asymmetry in Measurements on Materials and Biological Systems
Alessio Lapolla, Jeremy C. Smith, Aljaž Godec
Many measurements on soft condensed matter (e.g., biological and materials) systems track low-dimensional observables projected from the full system phase space as a function of ti…
A Toolbox for Quantifying Memory in Dynamics Along Reaction Coordinates
Alessio Lapolla, Aljaž Godec
Memory effects in time-series of experimental observables are ubiquitous, have important cosequences for the interpretation of kinetic data, and may even affect the function of bio…