9 citations · 14 across the 5 of their papers we have counts for
6 papers
Making mathematical online resources FAIR: at the example of small phylogenetic trees
Tabea Bacher, Marina Garrote-López, Christiane Görgen +1
We report on the process of taking an early 2000's mathematical library, the Small Phylogenetic Trees, and transforming it into a FAIR, modern, and sustainable repository for data…
Cumulant Tensors in Partitioned Independent Component Analysis
Marina Garrote-López, Monroe Stephenson
In this work, we explore Partitioned Independent Component Analysis (PICA), an extension of the well-established Independent Component Analysis (ICA) framework. Traditionally, ICA…
Computing algebraic degrees of phylogenetic varieties
Luis David Garcia Puente, Marina Garrote-López, Elima Shehu
A phylogenetic variety is an algebraic variety parameterized by a statistical model of the evolution of biological sequences along a tree. Understanding this variety is an importan…
Robust estimation of tree structured models
Marta Casanellas, Marina Garrote-López, Piotr Zwiernik
Consider the problem of learning undirected graphical models on trees from corrupted data. Recently Katiyar et al. showed that it is possible to recover trees from noisy binary dat…
SAQ: semi-algebraic quartet reconstruction method
Marta Casanellas, Jesús Fernández-Sánchez, Marina Garrote-López
We present the phylogenetic quartet reconstruction method SAQ (Semi-algebraic quartet reconstruction). SAQ is consistent with the most general Markov model of nucleotide substituti…
Distance to the stochastic part of phylogenetic varieties
Marta Casanellas, Jesús Fernández-Sánchez, Marina Garrote-López
Modelling the substitution of nucleotides along a phylogenetic tree is usually done by a hidden Markov process. This allows to define a distribution of characters at the leaves of…