3 papers
q-bio.BM2026
Scalable Enumeration of Pareto-optimal Polymers for Computing Equilibrium Concentrations
Archit Patil, Minki Hhan, David Soloveichik
Predicting equilibrium concentrations of molecular complexes is essential for verifying the behavior of engineered DNA systems. However, a finite set of monomer types can in princi…
q-bio.MN2026
Amplification at Equilibrium: Structural and Thermodynamic Limitations, and Implementation
Hamidreza Akef, Chia-Yu Sung, Aneesh Vanguri +1
Amplifying weak molecular signals is essential in both natural and engineered biochemical systems. While most amplification schemes operate out of equilibrium, relying on kinetic b…
quant-ph2025
Tight Bounds on the Spooky Pebble Game: Recycling Qubits with Measurements
Niels Kornerup, Jonathan Sadun, David Soloveichik
Pebble games are popular models for analyzing time-space trade-offs. In particular, the reversible pebble game is often applied in quantum algorithms like Grover's search to effici…