72 citations · 252 across the 5 of their papers we have counts for
3 papers · 1 filter
Conformational Fluctuations and Phases in Fused in Sarcoma (FUS) Low-Complexity Domain
D. Thirumalai, Abhinaw Kumar, Debayan Chakraborty +2
The well known phenomenon of phase separation in synthetic polymers and proteins has become a major topic in biophysics because it has been invoked as a mechanism of compartment fo…
Sequence-dependent Three Interaction Site (TIS) Model for Single and Double-stranded DNA
Debayan Chakraborty, Naoto Hori, Dave Thirumalai
We develop a robust coarse-grained model for single and double stranded DNA by representing each nucleotide by three interaction sites (TIS) located at the centers of mass of sugar…
Coarse-grained simulations of DNA overstretching
Flavio Romano, Debayan Chakraborty, Jonathan P. K. Doye +2
We use a recently developed coarse-grained model to simulate the overstretching of duplex DNA. Overstretching at 23C occurs at 74 pN in the model, about 6-7 pN higher than the expe…