30 citations · 102 across the 23 of their papers we have counts for
23 papers
Learning Wavelet-Sparse FDK for 3D Cone-Beam CT Reconstruction
Yipeng Sun, Linda-Sophie Schneider, Chengze Ye +4
Cone-Beam Computed Tomography (CBCT) is essential in medical imaging, and the Feldkamp-Davis-Kress (FDK) algorithm is a popular choice for reconstruction due to its efficiency. How…
CyclePose -- Leveraging Cycle-Consistency for Annotation-Free Nuclei Segmentation in Fluorescence Microscopy
Jonas Utz, Stefan Vocht, Anne Tjorven Buessen +6
In recent years, numerous neural network architectures specifically designed for the instance segmentation of nuclei in microscopic images have been released. These models embed nu…
Filter2Noise: A Framework for Interpretable and Zero-Shot Low-Dose CT Image Denoising
Yipeng Sun, Linda-Sophie Schneider, Siyuan Mei +8
Noise in low-dose computed tomography (LDCT) can obscure important diagnostic details. While deep learning offers powerful denoising, supervised methods require impractical paired…
DiffRenderGAN: Addressing Training Data Scarcity in Deep Segmentation Networks for Quantitative Nanomaterial Analysis through Differentiable Rendering and Generative Modelling
Dennis Possart, Leonid Mill, Florian Vollnhals +11
Nanomaterials exhibit distinctive properties governed by parameters such as size, shape, and surface characteristics, which critically influence their applications and interactions…
On the Influence of Smoothness Constraints in Computed Tomography Motion Compensation
Mareike Thies, Fabian Wagner, Noah Maul +6
Computed tomography (CT) relies on precise patient immobilization during image acquisition. Nevertheless, motion artifacts in the reconstructed images can persist. Motion compensat…
Differentiable Score-Based Likelihoods: Learning CT Motion Compensation From Clean Images
Mareike Thies, Noah Maul, Siyuan Mei +8
Motion artifacts can compromise the diagnostic value of computed tomography (CT) images. Motion correction approaches require a per-scan estimation of patient-specific motion patte…
Segmentation-Guided Knee Radiograph Generation using Conditional Diffusion Models
Siyuan Mei, Fuxin Fan, Fabian Wagner +4
Deep learning-based medical image processing algorithms require representative data during development. In particular, surgical data might be difficult to obtain, and high-quality…
BigReg: An Efficient Registration Pipeline for High-Resolution X-Ray and Light-Sheet Fluorescence Microscopy
Siyuan Mei, Fuxin Fan, Mareike Thies +9
Recently, X-ray microscopy (XRM) and light-sheet fluorescence microscopy (LSFM) have emerged as pivotal tools in preclinical research, particularly for studying bone remodeling dis…
EAGLE: An Edge-Aware Gradient Localization Enhanced Loss for CT Image Reconstruction
Yipeng Sun, Yixing Huang, Linda-Sophie Schneider +5
Computed Tomography (CT) image reconstruction is crucial for accurate diagnosis and deep learning approaches have demonstrated significant potential in improving reconstruction qua…
Data-Driven Filter Design in FBP: Transforming CT Reconstruction with Trainable Fourier Series
Yipeng Sun, Linda-Sophie Schneider, Fuxin Fan +6
In this study, we introduce a Fourier series-based trainable filter for computed tomography (CT) reconstruction within the filtered backprojection (FBP) framework. This method over…
A gradient-based approach to fast and accurate head motion compensation in cone-beam CT
Mareike Thies, Fabian Wagner, Noah Maul +9
Cone-beam computed tomography (CBCT) systems, with their flexibility, present a promising avenue for direct point-of-care medical imaging, particularly in critical scenarios such a…
Focus on Content not Noise: Improving Image Generation for Nuclei Segmentation by Suppressing Steganography in CycleGAN
Jonas Utz, Tobias Weise, Maja Schlereth +5
Annotating nuclei in microscopy images for the training of neural networks is a laborious task that requires expert knowledge and suffers from inter- and intra-rater variability, e…
Exploring Epipolar Consistency Conditions for Rigid Motion Compensation in In-vivo X-ray Microscopy
Mareike Thies, Fabian Wagner, Mingxuan Gu +10
Intravital X-ray microscopy (XRM) in preclinical mouse models is of vital importance for the identification of microscopic structural pathological changes in the bone which are cha…
Noise2Contrast: Multi-Contrast Fusion Enables Self-Supervised Tomographic Image Denoising
Fabian Wagner, Mareike Thies, Laura Pfaff +10
Self-supervised image denoising techniques emerged as convenient methods that allow training denoising models without requiring ground-truth noise-free data. Existing methods usual…
Gradient-Based Geometry Learning for Fan-Beam CT Reconstruction
Mareike Thies, Fabian Wagner, Noah Maul +10
Incorporating computed tomography (CT) reconstruction operators into differentiable pipelines has proven beneficial in many applications. Such approaches usually focus on the proje…
On the Benefit of Dual-domain Denoising in a Self-supervised Low-dose CT Setting
Fabian Wagner, Mareike Thies, Laura Pfaff +9
Computed tomography (CT) is routinely used for three-dimensional non-invasive imaging. Numerous data-driven image denoising algorithms were proposed to restore image quality in low…
Trainable Joint Bilateral Filters for Enhanced Prediction Stability in Low-dose CT
Fabian Wagner, Mareike Thies, Felix Denzinger +7
Low-dose computed tomography (CT) denoising algorithms aim to enable reduced patient dose in routine CT acquisitions while maintaining high image quality. Recently, deep learning~(…
ConFUDA: Contrastive Fewshot Unsupervised Domain Adaptation for Medical Image Segmentation
Mingxuan Gu, Sulaiman Vesal, Mareike Thies +5
Unsupervised domain adaptation (UDA) aims to transfer knowledge learned from a labeled source domain to an unlabeled target domain. Contrastive learning (CL) in the context of UDA…
Few-shot Unsupervised Domain Adaptation for Multi-modal Cardiac Image Segmentation
Mingxuan Gu, Sulaiman Vesal, Ronak Kosti +1
Unsupervised domain adaptation (UDA) methods intend to reduce the gap between source and target domains by using unlabeled target domain and labeled source domain data, however, in…
Ultra Low-Parameter Denoising: Trainable Bilateral Filter Layers in Computed Tomography
Fabian Wagner, Mareike Thies, Mingxuan Gu +9
Computed tomography is widely used as an imaging tool to visualize three-dimensional structures with expressive bone-soft tissue contrast. However, CT resolution and radiation dose…
Learned Cone-Beam CT Reconstruction Using Neural Ordinary Differential Equations
Mareike Thies, Fabian Wagner, Mingxuan Gu +3
Learned iterative reconstruction algorithms for inverse problems offer the flexibility to combine analytical knowledge about the problem with modules learned from data. This way, t…
Adapt Everywhere: Unsupervised Adaptation of Point-Clouds and Entropy Minimisation for Multi-modal Cardiac Image Segmentation
Sulaiman Vesal, Mingxuan Gu, Ronak Kosti +2
Deep learning models are sensitive to domain shift phenomena. A model trained on images from one domain cannot generalise well when tested on images from a different domain, despit…
Spatio-temporal Multi-task Learning for Cardiac MRI Left Ventricle Quantification
Sulaiman Vesal, Mingxuan Gu, Andreas Maier +1
Quantitative assessment of cardiac left ventricle (LV) morphology is essential to assess cardiac function and improve the diagnosis of different cardiovascular diseases. In current…