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20242026
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cs.CL2026

BioMatrix: Towards a Comprehensive Biological Foundation Model Spanning the Modality Matrix of Sequences, Structures, and Language

Qizhi Pei, Zhimeng Zhou, Yi Duan +9

We present BioMatrix, the first multimodal foundation model that natively integrates sequences, structures, and natural language for both molecules and proteins within a single dec…

cs.CL2026

CiteVQA: Benchmarking Evidence Attribution for Trustworthy Document Intelligence

Dongsheng Ma, Jiayu Li, Zhengren Wang +8

Multimodal Large Language Models (MLLMs) have significantly advanced document understanding, yet current Doc-VQA evaluations score only the final answer and leave the supporting ev…

cs.CL2025

Closing the Data Loop: Using OpenDataArena to Engineer Superior Training Datasets

Xin Gao, Xiaoyang Wang, Yun Zhu +3

The construction of Supervised Fine-Tuning (SFT) datasets is a critical yet under-theorized stage in the post-training of Large Language Models (LLMs), as prevalent practices often…

cs.CL2025

Middo: Model-Informed Dynamic Data Optimization for Enhanced LLM Fine-Tuning via Closed-Loop Learning

Zinan Tang, Xin Gao, Qizhi Pei +5

Supervised Fine-Tuning (SFT) Large Language Models (LLM) fundamentally rely on high-quality training data. While data selection and data synthesis are two common strategies to impr…

cs.CL2025

Scaling Code-Assisted Chain-of-Thoughts and Instructions for Model Reasoning

Honglin Lin, Qizhi Pei, Xin Gao +5

Reasoning capability is pivotal for Large Language Models (LLMs) to solve complex tasks, yet achieving reliable and scalable reasoning remains challenging. While Chain-of-Thought (…

cs.CL2025

OpenHuEval: Evaluating Large Language Model on Hungarian Specifics

Haote Yang, Xingjian Wei, Jiang Wu +18

We introduce OpenHuEval, the first benchmark for LLMs focusing on the Hungarian language and specifics. OpenHuEval is constructed from a vast collection of Hungarian-specific mater…