65 citations · 173 across the 27 of their papers we have counts for
30 papers
Feature Space Guidance for Breast Cancer Classification in DCE-MRI
Benjamin Hamm, Yannick Kirchhoff, Maximilian Rokuss +6
Dynamic contrast enhanced breast MRI (DCE-MRI) is a powerful clinical tool for breast cancer detection, providing high resolution anatomical detail together with rich temporal cont…
Resolution Meets Reduction: Efficient Visual Context for 3D Radiology Report Generation
Jonathan Suprijadi, Raphael Stock, Moritz Langenberg +10
Vision-language models offer a promising path toward automating radiology report generation, but applying them to full 3D CT volumes poses substantial computational challenges. Mod…
MedNeXt-v2: Scaling 3D ConvNeXts for Large-Scale Supervised Representation Learning in Medical Image Segmentation
Saikat Roy, Yannick Kirchhoff, Constantin Ulrich +4
Large-scale supervised pretraining is rapidly reshaping 3D medical image segmentation. However, existing efforts focus primarily on increasing dataset size and overlook the questio…
Comprehensive language-image pre-training for 3D medical image understanding
Tassilo Wald, Ibrahim Ethem Hamamci, Yuan Gao +13
In the 3D medical image domain, vision-language pre-training is used to create vision-language encoders (VLEs) that can support radiologists by retrieving patients with similar abn…
The Missing Piece: A Case for Pre-Training in 3D Medical Object Detection
Katharina Eckstein, Constantin Ulrich, Michael Baumgartner +5
Large-scale pre-training holds the promise to advance 3D medical object detection, a crucial component of accurate computer-aided diagnosis. Yet, it remains underexplored compared…
Large Scale Supervised Pretraining For Traumatic Brain Injury Segmentation
Constantin Ulrich, Tassilo Wald, Fabian Isensee +1
The segmentation of lesions in Moderate to Severe Traumatic Brain Injury (msTBI) presents a significant challenge in neuroimaging due to the diverse characteristics of these lesion…
nnInteractive: Redefining 3D Promptable Segmentation
Fabian Isensee, Maximilian Rokuss, Lars Krämer +10
Accurate and efficient 3D segmentation is essential for both clinical and research applications. While foundation models like SAM have revolutionized interactive segmentation, thei…
Primus: Enforcing Attention Usage for 3D Medical Image Segmentation
Tassilo Wald, Saikat Roy, Fabian Isensee +7
Transformers have achieved remarkable success across multiple fields, yet their impact on 3D medical image segmentation remains limited with convolutional networks still dominating…
LesionLocator: Zero-Shot Universal Tumor Segmentation and Tracking in 3D Whole-Body Imaging
Maximilian Rokuss, Yannick Kirchhoff, Seval Akbal +7
In this work, we present LesionLocator, a framework for zero-shot longitudinal lesion tracking and segmentation in 3D medical imaging, establishing the first end-to-end model capab…
A Unified Framework for Foreground and Anonymization Area Segmentation in CT and MRI Data
Michal Nohel, Constantin Ulrich, Jonathan Suprijadi +2
This study presents an open-source toolkit to address critical challenges in preprocessing data for self-supervised learning (SSL) for 3D medical imaging, focusing on data privacy…
An OpenMind for 3D medical vision self-supervised learning
Tassilo Wald, Constantin Ulrich, Jonathan Suprijadi +5
The field of self-supervised learning (SSL) for 3D medical images lacks consistency and standardization. While many methods have been developed, it is impossible to identify the cu…
RadioActive: 3D Radiological Interactive Segmentation Benchmark
Constantin Ulrich, Tassilo Wald, Emily Tempus +3
Effortless and precise segmentation with minimal clinician effort could greatly streamline clinical workflows. Recent interactive segmentation models, inspired by METAs Segment Any…
Touchstone Benchmark: Are We on the Right Way for Evaluating AI Algorithms for Medical Segmentation?
Pedro R. A. S. Bassi, Wenxuan Li, Yucheng Tang +50
How can we test AI performance? This question seems trivial, but it isn't. Standard benchmarks often have problems such as in-distribution and small-size test sets, oversimplified…
Decoupling Semantic Similarity from Spatial Alignment for Neural Networks
Tassilo Wald, Constantin Ulrich, Gregor Köhler +6
What representation do deep neural networks learn? How similar are images to each other for neural networks? Despite the overwhelming success of deep learning methods key questions…
Revisiting MAE pre-training for 3D medical image segmentation
Tassilo Wald, Constantin Ulrich, Stanislav Lukyanenko +6
Self-Supervised Learning (SSL) presents an exciting opportunity to unlock the potential of vast, untapped clinical datasets, for various downstream applications that suffer from th…
Longitudinal Segmentation of MS Lesions via Temporal Difference Weighting
Maximilian Rokuss, Yannick Kirchhoff, Saikat Roy +9
Accurate segmentation of Multiple Sclerosis (MS) lesions in longitudinal MRI scans is crucial for monitoring disease progression and treatment efficacy. Although changes across tim…
LNQ 2023 challenge: Benchmark of weakly-supervised techniques for mediastinal lymph node quantification
Reuben Dorent, Roya Khajavi, Tagwa Idris +24
Accurate assessment of lymph node size in 3D CT scans is crucial for cancer staging, therapeutic management, and monitoring treatment response. Existing state-of-the-art segmentati…
ReSi: A Comprehensive Benchmark for Representational Similarity Measures
Max Klabunde, Tassilo Wald, Tobias Schumacher +3
Measuring the similarity of different representations of neural architectures is a fundamental task and an open research challenge for the machine learning community. This paper pr…
Learned Image Compression for HE-stained Histopathological Images via Stain Deconvolution
Maximilian Fischer, Peter Neher, Tassilo Wald +9
Processing histopathological Whole Slide Images (WSI) leads to massive storage requirements for clinics worldwide. Even after lossy image compression during image acquisition, addi…
Mitigating False Predictions In Unreasonable Body Regions
Constantin Ulrich, Catherine Knobloch, Julius C. Holzschuh +7
Despite considerable strides in developing deep learning models for 3D medical image segmentation, the challenge of effectively generalizing across diverse image distributions pers…
nnU-Net Revisited: A Call for Rigorous Validation in 3D Medical Image Segmentation
Fabian Isensee, Tassilo Wald, Constantin Ulrich +4
The release of nnU-Net marked a paradigm shift in 3D medical image segmentation, demonstrating that a properly configured U-Net architecture could still achieve state-of-the-art re…
Skeleton Recall Loss for Connectivity Conserving and Resource Efficient Segmentation of Thin Tubular Structures
Yannick Kirchhoff, Maximilian R. Rokuss, Saikat Roy +8
Accurately segmenting thin tubular structures, such as vessels, nerves, roads or concrete cracks, is a crucial task in computer vision. Standard deep learning-based segmentation lo…
RecycleNet: Latent Feature Recycling Leads to Iterative Decision Refinement
Gregor Koehler, Tassilo Wald, Constantin Ulrich +6
Despite the remarkable success of deep learning systems over the last decade, a key difference still remains between neural network and human decision-making: As humans, we cannot…
cOOpD: Reformulating COPD classification on chest CT scans as anomaly detection using contrastive representations
Silvia D. Almeida, Carsten T. Lüth, Tobias Norajitra +7
Classification of heterogeneous diseases is challenging due to their complexity, variability of symptoms and imaging findings. Chronic Obstructive Pulmonary Disease (COPD) is a pri…