186 citations · 186 across the 4 of their papers we have counts for
4 papers
BioSimulators: a central registry of simulation engines and services for recommending specific tools
Bilal Shaikh, Lucian P. Smith, Dan Vasilescu +68
Computational models have great potential to accelerate bioscience, bioengineering, and medicine. However, it remains challenging to reproduce and reuse simulations, in part, becau…
SED-ML Validator: tool for debugging simulation experiments
Bilal Shaikh, Andrew Philip Freiburger, Matthias König +7
Summary: More sophisticated models are needed to address problems in bioscience, synthetic biology, and precision medicine. To help facilitate the collaboration needed for such mod…
Practical Resources for Enhancing the Reproducibility of Mechanistic Modeling in Systems Biology
Michael L. Blinov, John H. Gennari, Jonathan R. Karr +3
Although reproducibility is a core tenet of the scientific method, it remains challenging to reproduce many results. Surprisingly, this also holds true for computational results in…
One file to share them all: Using the COMBINE Archive and the OMEX format to share all information about a modeling project
Frank T. Bergmann, Richard Adams, Stuart Moodie +15
Background: With the ever increasing use of computational models in the biosciences, the need to share models and reproduce the results of published studies efficiently and easily…