4 citations · 4 across the 4 of their papers we have counts for
4 papers
Tree rearrangement graphs admit paths of decreasing Robinson-Foulds distance
Lena Collienne, Frederick A Matsen
Tree rearrangements such as Nearest Neighbor Interchange (NNI) and Subtree Prune and Regraft (SPR) are commonly used to explore phylogenetic treespace. Computing distances based on…
TreeFlow: probabilistic modelling and automatic differentiation for phylogenetics
Christiaan Swanepoel, Mathieu Fourment, Xiang Ji +4
Probabilistic modelling frameworks are powerful tools for statistical modelling and inference. They are not immediately generalizable to phylogenetic problems due to the particular…
Variational Bayesian Supertrees
Michael Karcher, Cheng Zhang, Frederick A Matsen
Given overlapping subsets of a set of taxa (e.g. species), and posterior distributions on phylogenetic tree topologies for each of these taxon sets, how can we infer a posterior di…
Phylogenetics and the human microbiome
Frederick A Matsen
The human microbiome is the ensemble of genes in the microbes that live inside and on the surface of humans. Because microbial sequencing information is now much easier to come by…