4 citations · 4 across the 2 of their papers we have counts for
3 papers
q-bio.PE2025
Tree rearrangement graphs admit paths of decreasing Robinson-Foulds distance
Lena Collienne, Frederick A Matsen
Tree rearrangements such as Nearest Neighbor Interchange (NNI) and Subtree Prune and Regraft (SPR) are commonly used to explore phylogenetic treespace. Computing distances based on…
q-bio.PE2022★ 4 cited
TreeFlow: probabilistic modelling and automatic differentiation for phylogenetics
Christiaan Swanepoel, Mathieu Fourment, Xiang Ji +4
Probabilistic modelling frameworks are powerful tools for statistical modelling and inference. They are not immediately generalizable to phylogenetic problems due to the particular…
q-bio.PE2021
Variational Bayesian Supertrees
Michael Karcher, Cheng Zhang, Frederick A Matsen
Given overlapping subsets of a set of taxa (e.g. species), and posterior distributions on phylogenetic tree topologies for each of these taxon sets, how can we infer a posterior di…