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20212026
most citedLarge Language Models on Graphs: A Comprehensive Survey

8 citations · 34 across the 32 of their papers we have counts for

collaborators

35 papers

cs.CL2026

MultiCube-RAG for Multi-hop Question Answering

Jimeng Shi, Wei Hu, Runchu Tian +8

Multi-hop question answering (QA) necessitates multi-step reasoning and retrieval across interconnected subjects, attributes, and relations. Existing retrieval-augmented generation…

cs.IR2026

Improving Scientific Document Retrieval with Academic Concept Index

Jeyun Lee, Junhyoung Lee, Wonbin Kweon +7

Adapting general-domain retrievers to scientific domains is challenging due to the scarcity of large-scale domain-specific relevance annotations and the substantial mismatch in voc…

cs.CL2025

Structure-R1: Dynamically Leveraging Structural Knowledge in LLM Reasoning through Reinforcement Learning

Junlin Wu, Xianrui Zhong, Jiashuo Sun +4

Large language models (LLMs) have demonstrated remarkable advances in reasoning capabilities. However, their performance remains constrained by limited access to explicit and struc…

cs.CL2025★ 1 cited

GRACE: Generative Representation Learning via Contrastive Policy Optimization

Jiashuo Sun, Shixuan Liu, Zhaochen Su +6

Prevailing methods for training Large Language Models (LLMs) as text encoders rely on contrastive losses that treat the model as a black box function, discarding its generative and…

cs.CL2025★ 1 cited

Cell-o1: Training LLMs to Solve Single-Cell Reasoning Puzzles with Reinforcement Learning

Yin Fang, Qiao Jin, Guangzhi Xiong +6

Cell type annotation is a key task in analyzing the heterogeneity of single-cell RNA sequencing data. Although recent foundation models automate this process, they typically annota…

cs.CL2025

An Empirical Study on Reinforcement Learning for Reasoning-Search Interleaved LLM Agents

Bowen Jin, Jinsung Yoon, Priyanka Kargupta +2

Reinforcement learning (RL) has demonstrated strong potential in training large language models (LLMs) capable of complex reasoning for real-world problem solving. More recently, R…

cs.LG2025

Hypercube-Based Retrieval-Augmented Generation for Scientific Question-Answering

Jimeng Shi, Sizhe Zhou, Bowen Jin +5

Large language models (LLMs) often need to incorporate external knowledge to solve theme-specific problems. Retrieval-augmented generation (RAG) has shown its high promise, empower…

cs.CL2025

Hybrid Latent Reasoning via Reinforcement Learning

Zhenrui Yue, Bowen Jin, Huimin Zeng +6

Recent advances in large language models (LLMs) have introduced latent reasoning as a promising alternative to autoregressive reasoning. By performing internal computation with hid…

cs.IR2025

CoRank: LLM-Based Compact Reranking with Document Features for Scientific Retrieval

Runchu Tian, Xueqiang Xu, Bowen Jin +2

Scientific retrieval is essential for advancing scientific knowledge discovery. Within this process, document reranking plays a critical role in refining first-stage retrieval resu…

cs.CL2025★ 1 cited

Benchmarking Retrieval-Augmented Generation for Chemistry

Xianrui Zhong, Bowen Jin, Siru Ouyang +5

Retrieval-augmented generation (RAG) has emerged as a powerful framework for enhancing large language models (LLMs) with external knowledge, particularly in scientific domains that…

cs.AI2025

GRAPHGPT-O: Synergistic Multimodal Comprehension and Generation on Graphs

Yi Fang, Bowen Jin, Jiacheng Shen +3

The rapid development of Multimodal Large Language Models (MLLMs) has enabled the integration of multiple modalities, including texts and images, within the large language model (L…

cs.IR2025

Improving Scientific Document Retrieval with Concept Coverage-based Query Set Generation

SeongKu Kang, Bowen Jin, Wonbin Kweon +4

In specialized fields like the scientific domain, constructing large-scale human-annotated datasets poses a significant challenge due to the need for domain expertise. Recent metho…

cs.CL2025

LLM Alignment as Retriever Optimization: An Information Retrieval Perspective

Bowen Jin, Jinsung Yoon, Zhen Qin +5

Large Language Models (LLMs) have revolutionized artificial intelligence with capabilities in reasoning, coding, and communication, driving innovation across industries. Their true…

cs.LG2025★ 4 cited

Deep Learning and Foundation Models for Weather Prediction: A Survey

Jimeng Shi, Azam Shirali, Bowen Jin +10

Physics-based numerical models have been the bedrock of atmospheric sciences for decades, offering robust solutions but often at the cost of significant computational resources. De…

cs.LG2024

Can Graph Neural Networks Learn Language with Extremely Weak Text Supervision?

Zihao Li, Lecheng Zheng, Bowen Jin +5

While great success has been achieved in building vision models with Contrastive Language-Image Pre-training (CLIP) over internet-scale image-text pairs, building transferable Grap…

cs.AI2024

InstructG2I: Synthesizing Images from Multimodal Attributed Graphs

Bowen Jin, Ziqi Pang, Bingjun Guo +3

In this paper, we approach an overlooked yet critical task Graph2Image: generating images from multimodal attributed graphs (MMAGs). This task poses significant challenges due to t…

cs.CL2024★ 5 cited

Long-Context LLMs Meet RAG: Overcoming Challenges for Long Inputs in RAG

Bowen Jin, Jinsung Yoon, Jiawei Han +1

Retrieval-augmented generation (RAG) empowers large language models (LLMs) to utilize external knowledge sources. The increasing capacity of LLMs to process longer input sequences…

cs.LG2024

CoDiCast: Conditional Diffusion Model for Global Weather Prediction with Uncertainty Quantification

Jimeng Shi, Bowen Jin, Jiawei Han +2

Accurate weather forecasting is critical for science and society. Yet, existing methods have not managed to simultaneously have the properties of high accuracy, low uncertainty, an…

cs.CL2024

Investigating Instruction Tuning Large Language Models on Graphs

Kerui Zhu, Bo-Wei Huang, Bowen Jin +5

Inspired by the recent advancements of Large Language Models (LLMs) in NLP tasks, there's growing interest in applying LLMs to graph-related tasks. This study delves into the capab…

cs.CL2024★ 3 cited

A Comprehensive Survey of Scientific Large Language Models and Their Applications in Scientific Discovery

Yu Zhang, Xiusi Chen, Bowen Jin +4

In many scientific fields, large language models (LLMs) have revolutionized the way text and other modalities of data (e.g., molecules and proteins) are handled, achieving superior…

cs.CL2024

Parameter-Efficient Tuning Large Language Models for Graph Representation Learning

Qi Zhu, Da Zheng, Xiang Song +4

Text-rich graphs, which exhibit rich textual information on nodes and edges, are prevalent across a wide range of real-world business applications. Large Language Models (LLMs) hav…

cs.CL2024★ 1 cited

Graph Chain-of-Thought: Augmenting Large Language Models by Reasoning on Graphs

Bowen Jin, Chulin Xie, Jiawei Zhang +8

Large language models (LLMs), while exhibiting exceptional performance, suffer from hallucinations, especially on knowledge-intensive tasks. Existing works propose to augment LLMs…

cs.IR2024

Improving Retrieval in Theme-specific Applications using a Corpus Topical Taxonomy

SeongKu Kang, Shivam Agarwal, Bowen Jin +3

Document retrieval has greatly benefited from the advancements of large-scale pre-trained language models (PLMs). However, their effectiveness is often limited in theme-specific ap…

cs.CL2024

Grasping the Essentials: Tailoring Large Language Models for Zero-Shot Relation Extraction

Sizhe Zhou, Yu Meng, Bowen Jin +1

Relation extraction (RE) aims to identify semantic relationships between entities within text. Despite considerable advancements, existing models predominantly require extensive an…