5 papers
Aleena: Alignment Agent for Research Software Engineering Collaborations
Kshitij Dani, Cordero Core, Landung Setiawan +4
Research software collaborations span meetings, informal chats, pull requests, and GitHub issues. A decision surfaced in a Slack thread, refined in a meeting, and implemented in a…
LLMoxie: Exploring Agentic AI for Scientific Software Development
Landung Setiawan, Anant Mittal, Cordero Core +5
In this paper, we describe LLMoxie, an institutional AI platform whose three-tiered architecture supports multi-cloud and on-premise inference, a LiteLLM/MLflow control plane for a…
phylo2vec: a library for vector-based phylogenetic tree manipulation
Neil Scheidwasser, Ayush Nag, Matthew J Penn +6
Phylogenetics is a fundamental component of evolutionary analysis frameworks in biology and linguistics. Recently, the advent of large-scale genomics and the SARS-CoV-2 pandemic ha…
Interoperable and scalable echosounder data processing with Echopype
Wu-Jung Lee, Landung Setiawan, Caesar Tuguinay +2
Echosounders are high-frequency sonar systems used to sense fish and zooplankton underwater. Their deployment on a variety of ocean observing platforms is generating vast amounts o…
Caustics: A Python Package for Accelerated Strong Gravitational Lensing Simulations
Connor Stone, Alexandre Adam, Adam Coogan +9
Gravitational lensing is the deflection of light rays due to the gravity of intervening masses. This phenomenon is observed in a variety of scales and configurations, involving any…