78 citations · 133 across the 5 of their papers we have counts for
7 papers
The energy-spectrum of bicompatible sequences
Fenix W. Huang, Christopher L. Barrett, Christian M. Reidys
Background: Genotype-phenotype maps provide a meaningful filtration of sequence space and RNA secondary structures are particular such phenotypes. Compatible sequences i.e.~sequenc…
Genetic robustness of let-7 miRNA sequence-structure pairs
Qijun He, Fenix W. Huang, Christopher Barrett +1
Genetic robustness, the preservation of evolved phenotypes against genotypic mutations, is one of the central concepts in evolution. In recent years a large body of work has focuse…
RNA secondary structures having a compatible sequence of certain nucleotide ratios
Christopher L. Barrett, Thomas J. X. Li, Christian M. Reidys
Given a random RNA secondary structure, , we study RNA sequences having fixed ratios of nuclotides that are compatible with . We perform this analysis for RNA secondary struc…
Sequence-structure relations of biopolymers
Christopher Barrett, Fenix W. Huang, Christian M. Reidys
Motivation: DNA data is transcribed into single-stranded RNA, which folds into specific molecular structures. In this paper we pose the question to what extent sequence- and struct…
TRANSIMS traffic flow characteristics
Kai Nagel, Paula Stretz, Martin Pieck +2
Knowledge of fundamental traffic flow characteristics of traffic simulation models is an essential requirement when using these models for the planning, design, and operation of tr…
Using microsimulation feedback for trip adaptation for realistic traffic in Dallas
Kai Nagel, Christopher L Barrett
This paper presents a day-to-day re-routing relaxation approach for traffic simulations. Starting from an initial planset for the routes, the route-based microsimulation is execute…