1 citations · 1 across the 2 of their papers we have counts for
3 papers
cs.AR2024★ 1 cited
DP-HLS: A High-Level Synthesis Framework for Accelerating Dynamic Programming Algorithms in Bioinformatics
Yingqi Cao, Anshu Gupta, Jason Liang +1
Dynamic programming (DP) based algorithms are essential yet compute-intensive parts of numerous bioinformatics pipelines, which typically involve populating a 2-D scoring matrix ba…
cs.DS2018
Parallel approach to sliding window sums
Roman Snytsar, Yatish Turakhia
Sliding window sums are widely used in bioinformatics applications, including sequence assembly, k-mer generation, hashing and compression. New vector algorithms which utilize the…
cs.AR2017
HoLiSwap: Reducing Wire Energy in L1 Caches
Yatish Turakhia, Subhasis Das, Tor M. Aamodt +1
This paper describes HoLiSwap a method to reduce L1 cache wire energy, a significant fraction of total cache energy, by swapping hot lines to the cache way nearest to the processor…